Gallery

Gallery#

PaleoBooks is a compendium of digital resources to bridge the gap between paleoclimate observations and models, and between past, present and future. The goal is as much to encourage adoption of open-source, free languages like R and Python by the observational paleoscience community as it is to encourage the modeling community to leverage the unique information coming from paleo archives.

The scholarly objects shown below are of several types:

Tutorials on how to overcome a particular technical difficulty (“Life Hacks”)
Tutorials on how to leverage open-source code to achieve easier, more transparent, or more powerful scientific workflows (“Science Bits”)
Examples of novel paleoscience using the Python ecosystem e.g. as turn-key supplementary material from recent publications (“Papers”)

In the following, “PaleoBooks” refers to curated collections of Jupyter Notebooks organized around various themes. “Chapters” refers to the components of these PaleoBooks. A system of tags allows both PaleoBooks and individual chapters to be associated with one another based on individual themes or methodologies, in addition to their host PaleoBook. These tags enable searching along 3 directions:

“Domains” refers to scientific themes or methodologies
“Formats” refers to the type of resource (Life Hacks, Science Bits, or Papers)
“Packages” refers to the packages being used in each notebook (e.g. Xarray)

The gallery below is a work in progress, and we encourage you to contribute your own analyses if you think they might bring enlightenment to, and/or ease the life of, fellow scientists.

PaleoBooks#

C-iTrace Paleobook C-iTRACE

C14 oceanography eNd tracers machine learning Deglaciation coordinate systems data viz watermass geometry clustering model output Paleoceanography Mystery Interval, cartopy seaborn matplotlib xarray scikit-learn pandas intake, Science Bits Lifehacks

https://linked.earth/citrace_paleobook/README.html

LMR-CMIP6 Paleobook LMR-CMIP6

Volcanic Input Holocene climate LMR AWS cloud-ready data coordinate systems data viz CMIP6 model output, pyleoclim cartopy matplotlib AWS xarray ipywidgets pandas intake, Science Bits Lifehacks

https://linked.earth/LMR_CMIP_paleobook/README.html

Reproducing the Hockey Stick - Proxy composite over the past 2,000 years using the cfr package 2k Proxy Composite

proxy composite temperature, pyleoclim seaborn cfr pandas numpy, Science Bits

https://khider.github.io/DISK-proxyComposite/intro.html

Watermass Geometry Proto exercise AncientWMG

clustering endmember mixing tracers watermass geometry, matplotlib scipy sqlalchemy scikit-learn pandas basemap, Science Bits

https://jordanplanders.github.io/past_life_wmg/intro.html

Detecting paleoclimate transitions with Laplacian Eigenmaps of Recurrence Matrices (LERM) Detecting Paleoclimate Transitions with LERM

data viz, pyleoclim ammonyte matplotlib, Figures Extras

https://alexkjames.github.io/Detecting_Paleoclimate_Transitions_with_LERM/intro.html

Reproducible workflows using the Pyleoclim package Pyleoclim science

paleoclimate correlation paleoceanography age uncertainty spectral analysis model-data comparison cross-wavelet analysis insolation wavelet analysis model output, pyleoclim cartopy climlab xarray pylipd, Science Bits

https://linked.earth/PyleoclimPaper/README.html

Coral Sr/Ca Calibration - An Example from Dry Tortugas Coral Sr/Ca calibration

Calibration Statistics paleoceanography coral calibration Paleocenography Sr/Ca Bayesian Statistics, pyleoclim Great Tables matplotlib statsmodel pymc pandas arviz, Calibration Getting Started

https://khider.github.io/dry-tortugas-calibration-fun/intro.html

Investigating interhemispheric precipitation changes over the past millennium PaleoPCA

paleoceanography modeling PCA, pyleoclim cartopy eofs matplotlib xarray pandas, Science Bits

https://projectpythia.org/paleoPCA-cookbook/README.html

Comparing Paleoclimate Ensembles PaleoEnsembles

Common Era PaMoDaCo data assimilation paleoclimatology timeseries modeling statistics data viz reconstruction PMIP, pyleoclim statsmodels pens seaborn matplotlib scipy pandas, Plume Distance Motivation Paleoclimate Applications Temporal Interpretation

https://linked.earth/pens/ug-eg24.html

Chapters#

pyODV

C-iTRACE

oceanography tracers data viz, xarray matplotlib cartopy pandas seaborn, Lifehacks

https://linked.earth/citrace_paleobook/pyODV

data_on_a_model_grid

C-iTRACE

model output oceanography coordinate systems, xarray matplotlib cartopy pandas intake, Lifehacks

https://linked.earth/citrace_paleobook/working_with_data_on_a_model_grid

model_data_comp

C-iTRACE

model output eNd, xarray matplotlib cartopy pandas, Science Bits

https://linked.earth/citrace_paleobook/data_scatter_on_pcolor

clustering

C-iTRACE

clustering machine learning watermass geometry, xarray matplotlib cartopy scikit-learn, Science Bits

https://linked.earth/citrace_paleobook/clustering

model_downcore_D14C

C-iTRACE

C14 Paleoceanography Deglaciation Mystery Interval, xarray matplotlib cartopy pandas, Science Bits

https://linked.earth/citrace_paleobook/PaMoDaCo_downcore_D14C

data_from_esm_cloudcat

LMR-CMIP6

AWS cloud-ready data data viz CMIP6, intake AWS xarray pandas, Lifehacks

https://linked.earth/LMR_CMIP_paleobook/data_from_esm_cloudcat

spatial_snapshots

LMR-CMIP6

model output CMIP6 coordinate systems, xarray matplotlib cartopy pandas, Lifehacks

https://linked.earth/LMR_CMIP_paleobook/spatial_snapshots_xarray_bonuses

widget_primer

LMR-CMIP6

model output, ipywidgets matplotlib, Lifehacks

https://linked.earth/LMR_CMIP_paleobook/widget_primer

CMIP6_LMR

LMR-CMIP6

model output LMR CMIP6, xarray matplotlib cartopy pandas pyleoclim, Science Bits

https://linked.earth/LMR_CMIP_paleobook/CMIP6_LMR

VICS_dashboard

LMR-CMIP6

Volcanic Input Holocene climate LMR CMIP6, xarray matplotlib cartopy ipywidgets, Science Bits

https://linked.earth/LMR_CMIP_paleobook/VICS_dashboard

Hockey Stick

2k Proxy Composite

proxy composite temperature, numpy seaborn pandas pyleoclim cfr, Science Bits

https://khider.github.io/DISK-proxyComposite/HockeyStick

Capstone notebook

AncientWMG

watermass geometry tracers endmember mixing, basemap scipy matplotlib pandas sqlalchemy, Science Bits

https://jordanplanders.github.io/past_life_wmg/jlanders_capstone_fixed

Cluster Centers

AncientWMG

clustering watermass geometry, basemap scikit-learn matplotlib, Science Bits

https://jordanplanders.github.io/past_life_wmg/clustering_centers_on_raw