Gallery#
PaleoBooks is a compendium of digital resources to bridge the gap between paleoclimate observations and models, and between past, present and future. The goal is as much to encourage adoption of open-source, free languages like R and Python by the observational paleoscience community as it is to encourage the modeling community to leverage the unique information coming from paleo archives.
The scholarly objects shown below are of several types:
Tutorials on how to overcome a particular technical difficulty (“Life Hacks”)
Tutorials on how to leverage open-source code to achieve easier, more transparent, or more powerful scientific workflows (“Science Bits”)
Examples of novel paleoscience using the Python ecosystem e.g. as turn-key supplementary material from recent publications (“Papers”)
In the following, “PaleoBooks” refers to curated collections of Jupyter Notebooks organized around various themes. “Chapters” refers to the components of these PaleoBooks. A system of tags allows both PaleoBooks and individual chapters to be associated with one another based on individual themes or methodologies, in addition to their host PaleoBook. These tags enable searching along 3 directions:
“Domains” refers to scientific themes or methodologies
“Formats” refers to the type of resource (Life Hacks, Science Bits, or Papers)
“Packages” refers to the packages being used in each notebook (e.g. Xarray)
The gallery below is a work in progress, and we encourage you to contribute your own analyses if you think they might bring enlightenment to, and/or ease the life of, fellow scientists.
PaleoBooks#
Lifehacks Science Bits, watermass geometry model output tracers coordinate systems clustering C14 Paleoceanography oceanography data viz machine learning Mystery Interval Deglaciation eNd, matplotlib xarray scikit-learn intake seaborn pandas cartopy
Science Bits, temperature proxy composite, numpy cfr seaborn pandas pyleoclim
Science Bits, clustering tracers watermass geometry endmember mixing, scipy matplotlib scikit-learn basemap sqlalchemy pandas
Main Analysis Extras, data viz, ammonyte matplotlib pyleoclim
Science Bits, cross-wavelet analysis paleoceanography wavelet analysis correlation paleoclimate model output spectral analysis insolation model-data comparison age uncertainty, xarray climlab pylipd cartopy pyleoclim
Calibration Getting Started, paleoceanography Bayesian Statistics Statistics coral Sr/Ca Calibration calibration Paleocenography, matplotlib pymc pandas arviz statsmodel Great Tables pyleoclim
Science Bits, paleoceanography modeling PCA, matplotlib xarray eofs pandas cartopy pyleoclim
Plume Distance Paleoclimate Applications Motivation Temporal Interpretation, PMIP statistics paleoclimatology PaMoDaCo data assimilation data viz Common Era timeseries modeling reconstruction, scipy pens statsmodels matplotlib seaborn pandas pyleoclim
Main Analysis Loading Data Exploring the Data, data wrangling data viz data analysis, matplotlib pyLiPD basemap ammonyte pylipd pyleoclim
Extensions Data Manipulation Core Methods, PCA age modeling dimension reduction visualization tidyverse ensemble calibration correlation data wrangling mapping regression spectral analysis wavelets uncertainty quantification age uncertainty LiPD, lipdR purrr ggplot2 oxcAAR readr dplyr
Exploring the Data Global Coherence Analysis Heuristic Examples Correlation Analysis, statistics signal processing data analysis paleoclimate data wrangling geospatial data viz, matplotlib numpy climlab pylipd cartopy pyleoclim
Main Analysis Supplement EC Calculations, data viz data supplement climate sensitivity, scipy statsmodels matplotlib pyleoclim
Data Assembly Data Assimilation Validation and Comparison, data wrangling data assimilation data viz data analysis, pens matplotlib xarray cfr
Data Assembly Data Assimilation Validation and Comparison, data wrangling data assimilation data viz data analysis, pens matplotlib cfr pylipd cartopy
Deep Dive into Dome C Millennial- to orbital-scale variability and Insolation Common Era Solar Signature, cross-wavelet analysis wavelet analysis spectral peaks knowledge base paleoclimate scaling behavior SPARQL spectral analysis singular spectrum analysis insolation, matplotlib seaborn pandas pylipd pangaeapy cartopy pyleoclim
Chapters#
oceanography tracers data viz, xarray matplotlib cartopy pandas seaborn, Lifehacks
model output oceanography coordinate systems, xarray matplotlib cartopy pandas intake, Lifehacks
model output eNd, xarray matplotlib cartopy pandas, Science Bits
clustering machine learning watermass geometry, xarray matplotlib cartopy scikit-learn, Science Bits
C14 Paleoceanography Deglaciation Mystery Interval, xarray matplotlib cartopy pandas, Science Bits
AWS cloud-ready data data viz CMIP6, intake AWS xarray pandas, Lifehacks
model output CMIP6 coordinate systems, xarray matplotlib cartopy pandas, Lifehacks
model output LMR CMIP6, xarray matplotlib cartopy pandas pyleoclim, Science Bits
proxy composite temperature, numpy seaborn pandas pyleoclim cfr, Science Bits
watermass geometry tracers endmember mixing, basemap scipy matplotlib pandas sqlalchemy, Science Bits
clustering watermass geometry, basemap scikit-learn matplotlib, Science Bits
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Extras
data viz, matplotlib pyleoclim ammonyte, Extras
data viz, matplotlib pyleoclim ammonyte, Extras
spectral analysis wavelet analysis cross-wavelet analysis insolation paleoceanography, xarray pyleoclim pylipd climlab, Science Bits
model output spectral analysis model-data comparison paleoclimate, xarray pyleoclim, Science Bits
paleoclimate correlation age uncertainty, xarray pyleoclim cartopy pylipd, Science Bits
paleoceanography Sr/Ca coral calibration, matplotlib pyleoclim pandas, Getting Started
Statistics Calibration Paleocenography, statsmodel Great Tables, Calibration
Bayesian Statistics Calibration Paleocenography, pymc arviz, Calibration
paleoceanography PCA modeling, xarray pyleoclim cartopy matplotlib pandas eofs, Science Bits
paleoclimatology data assimilation data viz, matplotlib pens pyleoclim, Motivation
data assimilation PaMoDaCo, matplotlib pens, Temporal Interpretation
data assimilation timeseries modeling, matplotlib pens statsmodels seaborn, Temporal Interpretation
data assimilation timeseries modeling, matplotlib pens pyleoclim, Temporal Interpretation
statistics PaMoDaCo, matplotlib pens seaborn, Plume Distance
statistics PaMoDaCo, matplotlib pens seaborn, Plume Distance
reconstruction statistics Common Era, matplotlib seaborn pens scipy, Paleoclimate Applications
reconstruction statistics Common Era, matplotlib pens, Paleoclimate Applications
data assimilation PaMoDaCo PMIP, matplotlib pens pyleoclim pandas, Paleoclimate Applications
data wrangling, pyLiPD, Loading Data
data wrangling, pylipd pyleoclim, Loading Data
data viz data analysis, pyleoclim matplotlib, Exploring the Data
data viz data analysis, pyleoclim basemap, Exploring the Data
data viz data analysis, pyleoclim matplotlib, Main Analysis
data analysis data viz, matplotlib pyleoclim, Main Analysis
data viz data analysis, pyleoclim ammonyte matplotlib, Main Analysis
data viz data analysis, pyleoclim matplotlib, Main Analysis
age modeling uncertainty quantification, geoChronR lipdR, Core Methods
correlation age uncertainty, geoChronR ggplot2, Core Methods
regression calibration, geoChronR readr ggplot2, Core Methods
spectral analysis wavelets, geoChronR, Core Methods
PCA dimension reduction, geoChronR, Core Methods
visualization, geoChronR ggplot2, Data Manipulation
data wrangling mapping, geoChronR, Data Manipulation
data wrangling tidyverse, geoChronR dplyr purrr, Data Manipulation
age modeling, geoChronR oxcAAR, Extensions
LiPD ensemble, geoChronR, Extensions
data wrangling, pylipd pyleoclim, Exploring the Data
geospatial data viz, cartopy pyleoclim matplotlib, Exploring the Data
data viz, matplotlib pyleoclim, Exploring the Data
data viz data analysis, pyleoclim matplotlib climlab, Heuristic Examples
paleoclimate data analysis data viz, matplotlib climlab pyleoclim, Heuristic Examples
data viz data analysis paleoclimate, matplotlib pyleoclim climlab, Global Coherence Analysis
paleoclimate signal processing, pyleoclim climlab matplotlib, Global Coherence Analysis
statistics data analysis, numpy matplotlib, Global Coherence Analysis
statistics paleoclimate, pyleoclim climlab matplotlib, Correlation Analysis
statistics paleoclimate, climlab pyleoclim matplotlib, Correlation Analysis
climate sensitivity, statsmodels, EC Calculations
data viz, scipy matplotlib, EC Calculations
data viz, scipy matplotlib, Main Analysis
data viz, scipy matplotlib, Main Analysis
data viz, scipy matplotlib, Main Analysis
data viz data supplement, pyleoclim matplotlib, Supplement
data wrangling, cfr, Data Assembly
data wrangling, cfr, Data Assembly
data assimilation data analysis, cfr, Data Assimilation
data viz data analysis, cfr xarray matplotlib pens, Validation and Comparison
data viz data analysis, cfr matplotlib, Validation and Comparison
data wrangling, cfr pylipd, Data Assembly
data wrangling, cfr pylipd, Data Assembly
data assimilation data analysis, cfr, Data Assimilation
data viz data analysis, cfr matplotlib cartopy pens, Validation and Comparison
data viz data analysis, cfr matplotlib cartopy pens, Validation and Comparison
cross-wavelet analysis insolation paleoclimate, pyleoclim, Common Era Solar Signature
SPARQL knowledge base, pandas, Millennial- to orbital-scale variability and Insolation
paleoclimate spectral analysis scaling behavior, pyleoclim pylipd seaborn matplotlib cartopy, Millennial- to orbital-scale variability and Insolation
paleoclimate spectral analysis spectral peaks, pyleoclim seaborn matplotlib cartopy, Millennial- to orbital-scale variability and Insolation
paleoclimate spectral analysis wavelet analysis cross-wavelet analysis singular spectrum analysis, pyleoclim, Deep Dive into Dome C
paleoclimate spectral analysis cross-wavelet analysis, pyleoclim pangaeapy, Deep Dive into Dome C