Gallery#
PaleoBooks is a compendium of digital resources to bridge the gap between paleoclimate observations and models, and between past, present and future. The goal is as much to encourage adoption of open-source, free languages like R and Python by the observational paleoscience community as it is to encourage the modeling community to leverage the unique information coming from paleo archives.
The scholarly objects shown below are of several types:
Tutorials on how to overcome a particular technical difficulty (“Life Hacks”)
Tutorials on how to leverage open-source code to achieve easier, more transparent, or more powerful scientific workflows (“Science Bits”)
Examples of novel paleoscience using the Python ecosystem e.g. as turn-key supplementary material from recent publications (“Papers”)
In the following, “PaleoBooks” refers to curated collections of Jupyter Notebooks organized around various themes. “Chapters” refers to the components of these PaleoBooks. A system of tags allows both PaleoBooks and individual chapters to be associated with one another based on individual themes or methodologies, in addition to their host PaleoBook. These tags enable searching along 3 directions:
“Domains” refers to scientific themes or methodologies
“Formats” refers to the type of resource (Life Hacks, Science Bits, or Papers)
“Packages” refers to the packages being used in each notebook (e.g. Xarray)
The gallery below is a work in progress, and we encourage you to contribute your own analyses if you think they might bring enlightenment to, and/or ease the life of, fellow scientists.
PaleoBooks#
Science Bits Lifehacks, model output watermass geometry Mystery Interval Paleoceanography clustering C14 coordinate systems data viz eNd Deglaciation oceanography machine learning tracers, scikit-learn intake pandas seaborn cartopy xarray matplotlib
Science Bits, proxy composite temperature, pandas seaborn pyleoclim cfr numpy
Science Bits, watermass geometry clustering endmember mixing tracers, scikit-learn pandas scipy sqlalchemy basemap matplotlib
Main Analysis Extras, data viz, matplotlib ammonyte pyleoclim
Science Bits, model output wavelet analysis cross-wavelet analysis insolation model-data comparison spectral analysis age uncertainty paleoceanography correlation paleoclimate, climlab cartopy pylipd pyleoclim xarray
Calibration Getting Started, calibration Sr/Ca Statistics Calibration Paleocenography paleoceanography coral Bayesian Statistics, statsmodel pandas pymc pyleoclim arviz matplotlib Great Tables
Science Bits, modeling PCA paleoceanography, pandas cartopy pyleoclim xarray eofs matplotlib
Motivation Paleoclimate Applications Plume Distance Temporal Interpretation, PaMoDaCo reconstruction PMIP data assimilation data viz paleoclimatology timeseries modeling Common Era statistics, pandas seaborn pens scipy pyleoclim statsmodels matplotlib
Exploring the Data Main Analysis Loading Data, data wrangling data analysis data viz, pylipd pyleoclim basemap pyLiPD ammonyte matplotlib
Data Manipulation Core Methods Extensions, calibration PCA uncertainty quantification mapping ensemble data wrangling tidyverse age modeling spectral analysis LiPD wavelets dimension reduction visualization age uncertainty correlation regression, oxcAAR dplyr readr lipdR purrr ggplot2
Heuristic Examples Exploring the Data Global Coherence Analysis Correlation Analysis, signal processing data wrangling data analysis geospatial data viz statistics paleoclimate, climlab cartopy pylipd pyleoclim matplotlib numpy
Main Analysis EC Calculations Supplement, climate sensitivity data viz data supplement, statsmodels scipy pyleoclim matplotlib
Data Assimilation Data Assembly Validation and Comparison, data wrangling data analysis data viz data assimilation, xarray matplotlib pens cfr
Data Assimilation Data Assembly Validation and Comparison, data wrangling data analysis data viz data assimilation, pens cartopy pylipd cfr matplotlib
Common Era Solar Signature Deep Diving Millennial- to orbital-scale variability and Insolation, scaling behavior wavelet analysis cross-wavelet analysis singular spectrum analysis insolation spectral analysis SPARQL spectral peaks knowledge base paleoclimate, pandas seaborn cartopy pylipd pyleoclim pangaeapy matplotlib
Chapters#
oceanography tracers data viz, xarray matplotlib cartopy pandas seaborn, Lifehacks
model output oceanography coordinate systems, xarray matplotlib cartopy pandas intake, Lifehacks
model output eNd, xarray matplotlib cartopy pandas, Science Bits
clustering machine learning watermass geometry, xarray matplotlib cartopy scikit-learn, Science Bits
C14 Paleoceanography Deglaciation Mystery Interval, xarray matplotlib cartopy pandas, Science Bits
AWS cloud-ready data data viz CMIP6, intake AWS xarray pandas, Lifehacks
model output CMIP6 coordinate systems, xarray matplotlib cartopy pandas, Lifehacks
model output LMR CMIP6, xarray matplotlib cartopy pandas pyleoclim, Science Bits
proxy composite temperature, numpy seaborn pandas pyleoclim cfr, Science Bits
watermass geometry tracers endmember mixing, basemap scipy matplotlib pandas sqlalchemy, Science Bits
clustering watermass geometry, basemap scikit-learn matplotlib, Science Bits
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Main Analysis
data viz, matplotlib pyleoclim ammonyte, Extras
data viz, matplotlib pyleoclim ammonyte, Extras
data viz, matplotlib pyleoclim ammonyte, Extras
spectral analysis wavelet analysis cross-wavelet analysis insolation paleoceanography, xarray pyleoclim pylipd climlab, Science Bits
model output spectral analysis model-data comparison paleoclimate, xarray pyleoclim, Science Bits
paleoclimate correlation age uncertainty, xarray pyleoclim cartopy pylipd, Science Bits
paleoceanography Sr/Ca coral calibration, matplotlib pyleoclim pandas, Getting Started
Statistics Calibration Paleocenography, statsmodel Great Tables, Calibration
Bayesian Statistics Calibration Paleocenography, pymc arviz, Calibration
paleoceanography PCA modeling, xarray pyleoclim cartopy matplotlib pandas eofs, Science Bits
paleoclimatology data assimilation data viz, matplotlib pens pyleoclim, Motivation
data assimilation PaMoDaCo, matplotlib pens, Temporal Interpretation
data assimilation timeseries modeling, matplotlib pens statsmodels seaborn, Temporal Interpretation
data assimilation timeseries modeling, matplotlib pens pyleoclim, Temporal Interpretation
statistics PaMoDaCo, matplotlib pens seaborn, Plume Distance
statistics PaMoDaCo, matplotlib pens seaborn, Plume Distance
reconstruction statistics Common Era, matplotlib seaborn pens scipy, Paleoclimate Applications
reconstruction statistics Common Era, matplotlib pens, Paleoclimate Applications
data assimilation PaMoDaCo PMIP, matplotlib pens pyleoclim pandas, Paleoclimate Applications
data wrangling, pyLiPD, Loading Data
data wrangling, pylipd pyleoclim, Loading Data
data viz data analysis, pyleoclim matplotlib, Exploring the Data
data viz data analysis, pyleoclim basemap, Exploring the Data
data viz data analysis, pyleoclim matplotlib, Main Analysis
data analysis data viz, matplotlib pyleoclim, Main Analysis
data viz data analysis, pyleoclim ammonyte matplotlib, Main Analysis
data viz data analysis, pyleoclim matplotlib, Main Analysis
age modeling uncertainty quantification, geoChronR lipdR, Core Methods
correlation age uncertainty, geoChronR ggplot2, Core Methods
regression calibration, geoChronR readr ggplot2, Core Methods
spectral analysis wavelets, geoChronR, Core Methods
PCA dimension reduction, geoChronR, Core Methods
visualization, geoChronR ggplot2, Data Manipulation
data wrangling mapping, geoChronR, Data Manipulation
data wrangling tidyverse, geoChronR dplyr purrr, Data Manipulation
age modeling, geoChronR oxcAAR, Extensions
LiPD ensemble, geoChronR, Extensions
data wrangling, pylipd pyleoclim, Exploring the Data
geospatial data viz, cartopy pyleoclim matplotlib, Exploring the Data
data viz, matplotlib pyleoclim, Exploring the Data
data viz data analysis, pyleoclim matplotlib climlab, Heuristic Examples
paleoclimate data analysis data viz, matplotlib climlab pyleoclim, Heuristic Examples
data viz data analysis paleoclimate, matplotlib pyleoclim climlab, Global Coherence Analysis
paleoclimate signal processing, pyleoclim climlab matplotlib, Global Coherence Analysis
statistics data analysis, numpy matplotlib, Global Coherence Analysis
statistics paleoclimate, pyleoclim climlab matplotlib, Correlation Analysis
statistics paleoclimate, climlab pyleoclim matplotlib, Correlation Analysis
climate sensitivity, statsmodels, EC Calculations
data viz, scipy matplotlib, EC Calculations
data viz, scipy matplotlib, Main Analysis
data viz, scipy matplotlib, Main Analysis
data viz, scipy matplotlib, Main Analysis
data viz data supplement, pyleoclim matplotlib, Supplement
data wrangling, cfr, Data Assembly
data wrangling, cfr, Data Assembly
data assimilation data analysis, cfr, Data Assimilation
data viz data analysis, cfr xarray matplotlib pens, Validation and Comparison
data viz data analysis, cfr matplotlib, Validation and Comparison
data wrangling, cfr pylipd, Data Assembly
data wrangling, cfr pylipd, Data Assembly
data assimilation data analysis, cfr, Data Assimilation
data viz data analysis, cfr matplotlib cartopy pens, Validation and Comparison
data viz data analysis, cfr matplotlib cartopy pens, Validation and Comparison
cross-wavelet analysis insolation paleoclimate, pyleoclim, Common Era Solar Signature
SPARQL knowledge base, pandas, Millennial- to orbital-scale variability and Insolation
paleoclimate spectral analysis scaling behavior, pyleoclim pylipd seaborn matplotlib cartopy, Millennial- to orbital-scale variability and Insolation
paleoclimate spectral analysis spectral peaks, pyleoclim seaborn matplotlib cartopy, Millennial- to orbital-scale variability and Insolation
paleoclimate spectral analysis wavelet analysis cross-wavelet analysis singular spectrum analysis, pyleoclim, Deep Diving
paleoclimate spectral analysis cross-wavelet analysis, pyleoclim pangaeapy, Deep Diving